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Below is a list of my publications. If you'd like to see a citation report, please have a look at these reports from Web of Science, Scopus, Google Scholar or orcid.
Submitted OR In revision OR In press
Title: Registration of serial sections: An evaluation method based on distortions of the ground truths
- Oleg Lobachev, Takuya Funatomi, Alexander Pfaffenroth, Reinhold Förster, Lars Knudsen, Christoph Wrede, Michael Guthe, David Haberthür, Ruslan Hlushchuk, Thomas Salaets, Jaan Toelen, Simone Gaffling, Christian Mühlfeld, Roman Grothausmann
- submitted to Medical Image Analysis
Automated segmentation and description of the internal morphology of human permanent teeth by means of micro-CT
- David Haberthür, Ruslan Hlushchuk, Thomas Gerhard Wolf
- The manuscript was collaboratively written on manuscripts.io/, a live copy of the manuscript is available via a manubot-enabled GitHub repository here: https://habi.github.io/zmk-tooth-cohort-method-manuscript/
- preprint on bioRxiv: doi:10.1101/2020.10.27.356998
- submitted to BMC Oral Health
Synchrotron X-ray microbeam irradiation of the face: Tolerance of normal rabbit bones and teeth
Combination of µCT and light microscopy for generation-specific stereological analysis of pulmonary arterial branches: a proof-of-concept study
- Roman Grothausmann, Jonas Labode, Pablo Hernandez-Cerdan, David Haberthür, Ruslan Hlushchuk, Oleg Lobachev, Christina Brandenberger, Andre George Gie, Thomas Salaets, Jaan Toelen, Willi L. Wagner, Christian Mühlfeld
- in press at Histochemistry and Cell Biology
Computed tomography in Biomedicine
- Maria Gomez Lazaro, David Haberthür, Ruslan Hlushchuk
- Book chapter in: A compendium of imaging modalities for biological and preclinical research, IOP-IPEM ebook Series in Physics and Engineering in Medicine and Biology
- in print
Micro-CT Imaging of Thiel-Embalmed and Iodine-Stained Human Temporal Bone for 3D Modeling of Middle Ear
- Sebastian Halm, David Haberthür, Elisabeth Eppler, Valentin Djonov, Andreas Arnold
- submitted to Otolaryngology-Head and Neck Surgery
Pulmonary acini exhibit complex changes during postnatal rat lung development
- David Haberthür, Eveline Yao, Sébastien F. Barré, Tiziana P. Cremona, Stefan A. Tschanz, Johannes C. Schittny
- preprint on bioRxiv: doi:10.1101/786681
- Under revision in the American Journal of Physiology-Lung Cellular and Molecular Physiology
The C5a / C5a receptor 1 axis controls tissue neovascularization through CXCL4 release from platelets
- Henry Nording, Frederic Emschermann, David Haberthür, Matthias Mezger, Johannes Patzelt, Kai Knoep, Anne Nording, Moritz Meusel, Roza Meyer-Saraei, Ruslan Hlushchuk, Daniel Sedding, Oliver Borst, Ingo Eitel, Robert Feil, Bernd Pichler, Emmanouil Chavakis, Triantafyllos Chavakis, Philipp von Hundelshausen, Jörg Köhl, Meinrad Gawaz
- Under revision in Nature Communications
- IF 2019: 12.121
2020
The anatomical reliability of the Superficial Circumflex Iliac Artery Perforator (SCIP) Flap
Innovative high-resolution microCT of animal brain vasculature
Development of vascularized nerve scaffold using perfusion-decellularization and recellularization
Reptile-like physiology in Early Jurassic stem-mammals
- Elis Newham, Pamela Gill, Philippa Brewer, Michael Benton, Vincent Fernandez, Neil Gostling, David Haberthür, Jukka Jernvall, Tuomas Kankanpää, Aki Kallonen, Charles Navarro, Alexandra Pacureanu, Berit Zeller-Plumhoff, Kelly Richards, Kate Robson-Brown, Philipp Schneider, Heikki Suhonen, Paul Tafforeau, Katherine Williams
- preprint on bioRxiv: doi:10.1101/785360
- Short (German/English) feature in the Science magazine of the Swiss Radio about the manuscript.
Adaptation mechanism of the adult zebrafish respiratory organ to endurance training
- Matthias Messerli, Dea Aaldijk, David Haberthür, Helena Röss, Marcos Sande Melon, Carolina Garcia Poyatos, Oleksiy-Zakhar Khoma, Fluri A.M. Wieland, Sarya Fark and Valentin Djonov
- Preprint on bioRxiv: doi:10.1101/744300
2019
Several manuscripts started, none of them published in 2019, but in 2020…
2018
Direct determination of dissolution rates at crystal surface using 3D X-ray micro-tomography
Ex vivo microangioCT: Advances in microvascular imaging
2017
Synchrotron Microtomography Reveals the Fine Three-Dimensional Porosity of Composite Polysaccharide Aerogels
- Abdul Ghafar, Kirsti Parikka, David Haberthür, Maija Tenkanen, Kirsi S. Mikkonen and Jussi-Petteri Suuronen
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- IF 2017: 2.467
Correlative Imaging of the Murine Hind Limb Vasculature and Muscle Tissue by MicroCT and Light Microscopy
2016
Synchrotron X-ray computed microtomography study on gas hydrate decomposition in a sedimentary matrix
- Lei Yang, Andrzej Falenty, Marwen Chaouachi, David Haberthür, Werner F. Kuhs
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- IF 2016 3.201
The total number of acini remains constant throughout postnatal rat lung development
- Sébastien F. Barré, David Haberthür, Tiziana P. Cremona, Marco Stampanoni and Johannes C. Schittny
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- IF 2016: 4.281
On the path to the digital rock physics of gas hydrate bearing sediments – processing of in-situ synchrotron-tomography data
- Kathleen Sell, Erik-H. Saenger, Andrzej Falenty, Marwen Chaouachi, David Haberthür, Frieder Enzmann, Werner F. Kuhs, Michael Kersten
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- IF 2016: 3.495
2015
Microstructural evolution of gas hydrates in sedimentary matrices observed with synchrotron X-ray computed tomographic microscopy
- Marwen Chaouachi, Andrzej Falenty, Kathleen Sell, Frieder Enzmann, Michael Kersten, David Haberthür, Werner F. Kuhs
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- IF 2015: 2.993
2014
Assessment of the 3D Pore Structure and Individual Components of Pre-Shaped Catalyst Bodies by X-Ray Imaging
- Julio C. da Silva, Kevin Mader, Mirko Holler, David Haberthür, Ana Diaz, Manuel Guizar-Sicairos, Wu-Cheng Cheng, Yuying Shu, Jörg Raabe, Andreas Menzel, and Jeroen A. van Bokhoven
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- IF 2014: 4.556
Messtechnik und Sensorik am Paul Scherrer Institut
- Dominic Greiffenberg, David Haberthür, Eberhard H. Lehmann, Jürg Schefer, Niklaus Schlumpf, Bernd Schmitt und Marco Stampanoni
- Book chapter for Ingenieure bauen die Schweiz, Technikgeschichte aus erster Hand, Band 2
- ISBN: 9783038239123
Synchrotron-based X-ray tomographic microscopy for visualization of three-dimensional collagen matrices
- A M Pabst, W Wagner, A Kasaj, S Gebhardt, M Ackermann, A Astolfo, F Marone, D Haberthür, F Enzmann, Moritz A Konerding
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- IF 2015: 2.207
Efficient estimation of the total number of acini in adult rat lung
- Sébastien F. Barré, David Haberthür, Marco Stampanoni, Johannes C. Schittny
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- IF 2014: 1.26
In-situ micro-structural studies of gas hydrate formation in sedimentary matrices
- Werner F. Kuhs, Marwen Chaouachi, Andrzej Falenty, Kathleen Sell, Jens-Oliver Schwarz, Martin Wolf, Frieder Enzmann, Michael Kersten, David Haberthür
- Submitted to the Proceedings of the 8th International Conference on Gas Hydrates (ICGH8-2014) in Beijing, China, 28 July - 1 August, 2014
- Submitted to the EGU General Assembly 2015, BG7.3 in Vienna, Austria, 12 – 17 April 2015
Imaging angiogenesis: Perspectives and opportunities in tumour research – A method display
- Andreas Max Pabst, Maximilian Ackermann, Willi Wagner, David Haberthür, Thomas Ziebart, Moritz Anton Konerding
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- IF 2014: 2.933
2013
Visualization and stereological characterization of individual rat lung acini by high-resolution X-ray tomographic microscopy
- David Haberthür, Sébastien F. Barré, Stefan A. Tschanz, Eveline Yao, Marco Stampanoni and Johannes C. Schittny
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- IF 2013: 3.434
2012
The simultaneous role of an alveolus as flow mixer and flow feeder for the deposition of inhaled submicron particles
- Frank Henry, Shimon Haber, David Haberthür, Nenad Filipovic, D Milasinovic, Johannes C. Schittny and Akira Tsuda
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- IF 212: 1.519
2011
Local Strain Distribution in Real Three-Dimensional Alveolar Geometries
- Sophie M. K. Rausch, David Haberthür, Marco Stampanoni, Johannes C. Schittny and Wolfgang A. Wall
High-Resolution Phase-Contrast Imaging of Sub-micron Particles in Unstained Lung Parenchyma
- Johannes C. Schittny, Sébastien F. Barré, Rajmund Mokso, David Haberthür, Manuela Semmler-Behnke, Wolfgang G. Kreyling, Akira Tsuda and Marco Stampanoni
Following Dynamic Processes by X-ray Tomographic Microscopy with Sub-second Temporal Resolution
- R. Mokso, F. Marone, D. Haberthür, J.C. Schittny, G. Mikuljan, A. Isenegger, and M. Stampanoni
- Proceeding for the XRM2010
2010
Radiation dose optimized lateral expansion of the field of view in synchrotron radiation X-ray tomographic microscopy
- David Haberthür, Christoph Hintermüller, Federica Marona, Johannes C. Schittny and Marco Stampanoni
- Journal of Synchrotron Radiation, Cover Image!
Deciphering complex, functional structures with synchrotron-based absorption and phase contrast tomographic microscopy
- M. Stampanoni, J. Reichold, B. Weber, D. Haberthür, J. Schittny, J. Eller, F. N. Büchi and F. Marone
- Proceedings SPIE 7804
High resolution tomographic imaging of the alveolar region of the mammalian lung
- Ph.D-Thesis
- Institute of Anatomy, University of Bern
- May 2010
- low resolution pdf, 3.4 MB
- Archived entry in the University library of the University of Bern
2009
Multimodal imaging for the detection of sub-micron particles in the gas-exchange region of the mammalian lung
- David Haberthür, Manuela Semmler-Behnke, Shinji Takenaka, Wolfgang G Kreyling, Marco Stampanoni, Akira Tsuda and Johannes C Schittny
- Journal of Physics: Conference Series Volume 186 Number 1
Enhanced cathepsin k release from osteoclasts is linked to idiopathic osteoporosis in mice with BK channel ablation
- Sausbier, M, Dullin, C, Kabagema, C, Flockerzie, K, Haberthür, D, Wessels, J, Alves, F, Schittny, JC, Neuhuber, W, Ruth, P, Sausbier, U
- 50th Annual Meeting of the Deutsche Gesellschaft für Experimentelle und Klinische Pharmakologie und Toxikologie
2008
Finite Element 3D Reconstruction of the pulmonary acinus imaged by Synchrotron X-ray tomography
- Akira Tsuda, Nenad Filipovic, David Haberthür, Renee Dickie, Yasuto Matsui, Johannes C. Schittny
- Journal of Applied Physiology 105: 964-976, 2008, First published June 26, 2008
Quality guided wide field x-ray tomographic imaging
- Post-graduate Master Thesis of the MAS in Medical Physics
- University of Bern, Institute of Anatomy and Paul Scherrer Institute, Swiss Light Source
- August 2008
- pdf, 1.1 MB
Bioglass as Bone Substitute
- Homework for Lecture in Biocompatible Materials
- April 2008
- pdf 148 KB
- released under a CC Attribution-Non-Commercial 2.5 License
2007
Contact Lenses
- Homework for Lecture in Biocompatible Materials 1
- November 2007
- pdf, 193 KB
- released under a CC Attribution-Non-Commercial 2.5 License
2003-2006
I did something else then.
2002
Use of Lasers in Medicine: Tissue Soldering and Precise Cutting
- Master Thesis
- University of Bern, Institute of Applied Physics, Biomedical Photonics
- October 2002
- pdf, 1.2 MB