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— | microct:working_with_isq_files [2020/06/10 21:42] (current) – created - external edit 127.0.0.1 |
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| ====== Import ISQ files to other Systems ====== |
| Once you've [[remote_access#ftpgetting_the_data_off_the_u40|copied]] the .ISQ-files from the µCT onto your computer, you can import those files into [[http://rsbweb.nih.gov/ij/|ImageJ]] with the use of two different plugins. |
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| Below are two ways to import ISQ files |
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| ===== The Scanco Way ===== |
| Andres Laib from SCANCO once sent me a bunch of ImageJ Plugins which can be used to read ISQ files. They are all contained in {{microct:ISQtoImageJ.zip|this zip file}} (10 kB). |
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| {{ :microct:installplugin.png?200|}}To install, copy the .class-files from this archive to the "plugins" folder of ImageJ, then choose "Plugins -> Shortcuts -> Install Plugin" to install the plugin into the Plugins Menu (see image on the right). |
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| {{ :microct:imagejcommand.png?150|}}In the following dialog choose the plugin you want to install (Import_ISQ), put it into the Import Menu and set the command to "Import ISQ" (as shown in the image to the right). |
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| After successful installation of the plugin, you can use it by choosing: P"lugins -> Import ISQ". |
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| If the ISQ file you want to read is too large for your current ImageJ install, increase its memory under "Edit -> Options -> Memory & Threads" (or use [[http://pacific.mpi-cbg.de|Fiji]]). |
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| ===== Karl-Heinz Kunzelmann Way ===== |
| Prof. Dr. Karl-Heinz Kunzelmann has also written a nice ImageJ Plugin to import ISQ files. Find all the details on this plugin on [[http://www.dent.med.uni-muenchen.de/~kkunzelm/exponent-0.96.3/index.php?section=49|his website]]. I actually prefer this one to "the SCANCO way", since Mr. Kunzelmanns plugin also plays nicely with the brightness of the imported ISQ files. |
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| The plugin files are mirrored here: {{:microct:khks_microct.zip|}}. Fully copyright to and property of [[http://kunzelmann.de|Prof. Dr. Karl-Heinz Kunzelmann]]. |
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| {{ :microct:khk_import.png?200|}}After copying the files to to the plugin folder of ImageJ, you'll find the ISQ import under "File -> Import -> KHKs Scanco microCT ISQ FileReader" (see image to the right). |