<markdown> # Wednesday Morning - Scanning Probe Microscopies

# Wednesday Noon - Image Analysis Software Workshop Titles are linked to packages!

## [FIJI](http://pacific.mpi-cbg.de/wiki/index.php/Main_Page) - Fiji is just ImageJ - batteries included - All necessary plugins already installed - Segmentation - Great for Registration (2D images)

## [TOM Toolbox](http://www.biochem.mpg.de/baumeister/tom_e/index.html) - EM Tomography Toolbox for Titan & Tecnai - also standalone software for alignment and reconstruction, so useable without a microscope

## [XuvTools](http://www.xuvtools.org/) - combine multiple microscopic stacks into large field of view → stitching - works “only” on 3D-stack! - blazing speed

## [Avizo](http://www.vsg3d.com/vsg_prod_avizo_overview.php) - fast visualization and inspection - segmentation

## [Amira](http://www.amiravis.com/) - special editor for filament structures - skeletonization with visualization of Nodes and Segments

## [Imaris](http://www.bitplane.com/) - can load huge images

# Wednesday Afternoon - High resolution TEM and AFM ## H. Rose - Outline of an abstruction-free phase plate for a large range of spatial frequencies

## D. Fotiadis - HR TEM & AFM - Membrane Proteins - [IPLT](http://iplt.org/) → image processing library for 2D protein cristallography

## A.Beloch - Towards atomic resolution with STEM - Atomic resolution for gold particles - Gold nanoparticles can be shown as really nice balls, but doesn't seem to make sense, resolution not “good” enough in relation to size of nanoparticles.

## Tetsuo Oikawa - Atomic scale structural and elemental analysis with Cs-corrected STEM

## Vladislav Spassov - High Resolution TEM study of the initial stages of growth of MoSx thin films deposited by magnetron sputtering </markdown>