Table of Contents
Below is a list of my publications. If you'd like to see a citation report, please have a look at these reports from Web of Science, Scopus, Google Scholar or orcid.
Submitted OR In revision
Lymph node inclusion in a modified osteomyocutaneous allograft for vascularized composite allotransplantation: establishment and assessment of feasibility in a pig model
- Stefanie Hirsiger, Ioana Lese, Isabel Arenas Hoyos, Cédric Zubler, David Haberthür, Ruslan Hlushchuck, Valentin Djonov, Yara Banz, Ana Macek, Hendrik von Tengg-Kobligk, Daniela Casoni, Robert Rieben, Radu Olariu
- submitted to PRS Global Open
MicroCT-based method for imaging microvasculature within bone tissue
- David Haberthür, Oleksiy-Zakhar Khoma, Tim Hoessly, Eugenio Zoni, Marianna Kruithof-de Julio, Stewart D. Ryan, Myriam Grunewald, Benjamin Bellon, Rebecca Sandgren, Benjamin E. Pippenger, Dieter Bosshardt, Valentin Djonov, Ruslan Hlushchuk
- preprint on bioRxiv: doi:10.1101/2023.03.08.531678
- Re-submitted to Small Methods as smtd.202300914 after revisions were done for smtd.202300311
- Since submission, the manuscript is being worked on with the help of manubot, the canonical version of the manuscript is available via its GitHub repository here: http://microct.ch/microvasculature-manuscript/
Downregulation of WT1 transcription factor gene expression is required to promote myocardial fate
- Ines Joao Marques, Nadia Mercader, Alexander Ernst, Andrés Sanz-Morejón, Xavier Langa, Tanja Hetke, Adolfo Odriozola, Benoît Zuber; David Haberthür; Ruslan Hlushchuk; Carlos Torroja; Uta Naumann; Christoph Englert
- preprint on bioRxiv: doi:10.1101/2021.07.06.451274
- submitted to PLOS Biology
2024
Cox7a1 mediated CIV dimerization impacts skeletal muscle physiology and cardiac injury response
- Carolina García-Poyato, Prateek Arora, Enrique Calvo, Peter Vermathen: David Haberthür: Ines J Marques: Nick Kirschke: Maria Galardi-Castilla: Carla Lembke: Marco Meer: Paula Fernández-Montes: Alexander Ernst: Ruslan Hlushchuk: Jesús Vázquez: José Antonio Enríquez: Nadia Mercader
- accepted to Developmental Cell
2023
Physical properties and average atomic numbers of chondrules using computed tomography
Airspace diameter map - a quantitative measurement of all pulmonary airspaces to characterize structural lung diseases
- Sanja Blaskovic, Pinelopi Anagnostopoulou, Elena Borisova, Dominik Schittny, Yves Donati, David Haberthür, Zhe Zhou-Suckow, Marcus A. Mall, Christian M. Schlepütz, Marco Stampanoni, Constance Barazzone-Argiroffo, Johannes C. Schittny
Microtomographic investigation of a large corpus of cichlids
- David Haberthür, Mikki Law, Kassandra Ford, Marcel Häsler, Ole Seehausen, Ruslan Hlushchuk
- The manuscript was written with the help of manubot, its canonical version is available via its GitHub repository at: https://habi.github.io/EAWAG-manuscript/
Fossil Carychiidae (Eupulmonata, Ellobioidea) from the Lower Pleistocene Nashua Formation of Florida, with the description of a new species
Location specific pathology analysis of the monopodial pulmonary vasculature in a rabbit model of bronchopulmonary dysplasia
- Jonas Labode, David Haberthür, Ruslan Hlushchuk, Yannick Regin, Andre Gie, Thomas Salaets, Jaan Toelen, and Christian Mühlfeld
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- ISSN: 2051-817X
- CiteScore (Scopus): 3.9
- Journal Citation Indicator (Clarivate): 0.7
Is μCT-irradiation non-destructive? A noble gas study on matrix samples from the CV3 chondrite Allende
- Parastoo Ghaznavi, Yogita Kadlag, David Haberthür, Ruslan Hlushchuk, Ingo Leya
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- ISSN: 1945-5100
- IF: (2021): 2.890
- Journal Citation Reports (Clarivate, 2022): 41/87 (Geochemistry & Geophysics)
2022
Reply to: Revisiting life history and morphological proxies for early mammaliaform metabolic rates
- Elis Newham, Pamela Gill, Michael Benton, Philippa Brewer, Neil Gostling, David Haberthür , Jukka Jernvall, Tuomas Kankanpää, Aki Kallonen, Charles Navarro, Alexandra Pacureanu, Kelly Richards , Kate Robson Brown, Philipp Schneider, Heikki Suhonen, Paul Tafforeau, Katherine Williams, Berit Zeller-Plumhoff
Microbeam Radiation Therapy controls local growth of radioresistant melanoma and treats out-of-field locoregional metastasis
- Verdiana Trappetti, Marine Potez, Cristian Fernandez-Palomo, Vladislav Volarevic, Nahoko Shintani, Paolo Pellicioli, Alexander Ernst, David Haberthür, Jennifer M. Fazzari, Michael Krisch, Jean A. Laissue, Robin L. Anderson, Olga A. Martin, Valentin G. Djonov
2021
Tolerance of normal rabbit bones and teeth to synchrotron X-ray microbeam irradiation
Evaluating Registrations of Serial Sections With Distortions of the Ground Truths
- Oleg Lobachev, Takuya Funatomi, Alexander Pfaffenroth, Reinhold Förster, Lars Knudsen, Christoph Wrede, Michael Guthe, David Haberthür, Ruslan Hlushchuk, Thomas Salaets, Jaan Toelen, Simone Gaffling, Christian Mühlfeld, Roman Grothausmann
Internal morphology of 101 mandibular canines of a Swiss-German population by means of micro-CT: An ex vivo study and systematic review
A new Diancta species of the family Diplommatinidae (Cyclophoroidea) from Vanua Levu Island, Fiji
Pulmonary acini exhibit complex changes during postnatal rat lung development
- David Haberthür, Eveline Yao, Sébastien F. Barré, Tiziana P. Cremona, Stefan A. Tschanz, Johannes C. Schittny
- The manuscript was collaboratively written on Authorea and has been converted to a manubot-enabled GitHub repository. The newest version is always available here: https://habi.github.io/acinar-analysis-manuscript/
Synchrotron Microbeam Radiation Therapy for the Treatment of Lung Carcinoma: A Preclinical Study
Computed tomography
- Maria Gomez Lazaro, David Haberthür, Ruslan Hlushchuk
Micro-CT Imaging of Thiel-Embalmed and Iodine-Stained Human Temporal Bone for 3D Modeling of Middle Ear
Automated segmentation and description of the internal morphology of human permanent teeth by means of micro-CT
- David Haberthür, Ruslan Hlushchuk, Thomas Gerhard Wolf
- The manuscript was collaboratively written on manuscripts.io, a live copy of the manuscript is available via a manubot-enabled GitHub repository here: https://habi.github.io/zmk-tooth-cohort-method-manuscript
The C5a / C5a receptor 1 axis controls tissue neovascularization through CXCL4 release from platelets
- Henry Nording, Lasse Baron, David Haberthür, Frederic Emschermann, Matthias Mezger, Manuela Sauter, Reinhard Sauter, Johannes Patzelt, Kai Knoep, Anne Nording, Moritz Meusel, Roza Meyer-Saraei, Ruslan Hlushchuk, Daniel Sedding, Oliver Borst, Ingo Eitel, Christian Carsten, Robert Feil, Bernd Pichler, Jeanette Erdmann, Admar Verschoor, Emmanouil Chavakis, Triantafyllos Chavakis, Philipp von Hundelshausen, Joerg Koehl, Meinrad Gawaz, and Harald Langer
2020
Combination of µCT and light microscopy for generation-specific stereological analysis of pulmonary arterial branches: a proof-of-concept study
- Roman Grothausmann, Jonas Labode, Pablo Hernandez-Cerdan, David Haberthür, Ruslan Hlushchuk, Oleg Lobachev, Christina Brandenberger, Andre George Gie, Thomas Salaets, Jaan Toelen, Willi L. Wagner, Christian Mühlfeld
The anatomical reliability of the Superficial Circumflex Iliac Artery Perforator (SCIP) Flap
Innovative high-resolution microCT of animal brain vasculature
Development of vascularized nerve scaffold using perfusion-decellularization and recellularization
- Tsering Wüthrich, Ioana Lese, David Haberthür, Cédric Zubler, Ruslan Hlushchuk, Ekkehard Hewer, Louis Maistriaux, Pierre Gianello, Benoit Lengele, Robert Rieben, Esther Voegelin, Radu Olariu, Jérôme Duisit, Adriano Taddeo
Reptile-like physiology in Early Jurassic stem-mammals
- Elis Newham, Pamela Gill, Philippa Brewer, Michael Benton, Vincent Fernandez, Neil Gostling, David Haberthür, Jukka Jernvall, Tuomas Kankanpää, Aki Kallonen, Charles Navarro, Alexandra Pacureanu, Berit Zeller-Plumhoff, Kelly Richards, Kate Robson-Brown, Philipp Schneider, Heikki Suhonen, Paul Tafforeau, Katherine Williams
- Short (German/English) feature in the Science magazine of the Swiss Radio about the manuscript.
Adaptation mechanism of the adult zebrafish respiratory organ to endurance training
2018
Direct determination of dissolution rates at crystal surface using 3D X-ray micro-tomography
Ex vivo microangioCT: Advances in microvascular imaging
2017
Synchrotron Microtomography Reveals the Fine Three-Dimensional Porosity of Composite Polysaccharide Aerogels
- Abdul Ghafar, Kirsti Parikka, David Haberthür, Maija Tenkanen, Kirsi S. Mikkonen and Jussi-Petteri Suuronen
-
- IF 2017: 2.467
Correlative Imaging of the Murine Hind Limb Vasculature and Muscle Tissue by MicroCT and Light Microscopy
2016
Synchrotron X-ray computed microtomography study on gas hydrate decomposition in a sedimentary matrix
- Lei Yang, Andrzej Falenty, Marwen Chaouachi, David Haberthür, Werner F. Kuhs
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- IF 2016 3.201
The total number of acini remains constant throughout postnatal rat lung development
- Sébastien F. Barré, David Haberthür, Tiziana P. Cremona, Marco Stampanoni and Johannes C. Schittny
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- IF 2016: 4.281
On the path to the digital rock physics of gas hydrate bearing sediments – processing of in-situ synchrotron-tomography data
- Kathleen Sell, Erik-H. Saenger, Andrzej Falenty, Marwen Chaouachi, David Haberthür, Frieder Enzmann, Werner F. Kuhs, Michael Kersten
-
- IF 2016: 3.495
2015
Microstructural evolution of gas hydrates in sedimentary matrices observed with synchrotron X-ray computed tomographic microscopy
- Marwen Chaouachi, Andrzej Falenty, Kathleen Sell, Frieder Enzmann, Michael Kersten, David Haberthür, Werner F. Kuhs
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- IF 2015: 2.993
2014
Assessment of the 3D Pore Structure and Individual Components of Pre-Shaped Catalyst Bodies by X-Ray Imaging
- Julio C. da Silva, Kevin Mader, Mirko Holler, David Haberthür, Ana Diaz, Manuel Guizar-Sicairos, Wu-Cheng Cheng, Yuying Shu, Jörg Raabe, Andreas Menzel, and Jeroen A. van Bokhoven
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- IF 2014: 4.556
Messtechnik und Sensorik am Paul Scherrer Institut
- Dominic Greiffenberg, David Haberthür, Eberhard H. Lehmann, Jürg Schefer, Niklaus Schlumpf, Bernd Schmitt und Marco Stampanoni
- Book chapter for Ingenieure bauen die Schweiz, Technikgeschichte aus erster Hand, Band 2
- ISBN: 978-3-03823-912-3
Synchrotron-based X-ray tomographic microscopy for visualization of three-dimensional collagen matrices
- A M Pabst, W Wagner, A Kasaj, S Gebhardt, M Ackermann, A Astolfo, F Marone, D Haberthür, F Enzmann, Moritz A Konerding
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- IF 2015: 2.207
Efficient estimation of the total number of acini in adult rat lung
- Sébastien F. Barré, David Haberthür, Marco Stampanoni, Johannes C. Schittny
-
- IF 2014: 1.26
In-situ micro-structural studies of gas hydrate formation in sedimentary matrices
- Werner F. Kuhs, Marwen Chaouachi, Andrzej Falenty, Kathleen Sell, Jens-Oliver Schwarz, Martin Wolf, Frieder Enzmann, Michael Kersten, David Haberthür
- Submitted to the Proceedings of the 8th International Conference on Gas Hydrates (ICGH8-2014) in Beijing, China, 28 July - 1 August, 2014
- Submitted to the EGU General Assembly 2015, BG7.3 in Vienna, Austria, 12 – 17 April 2015
Imaging angiogenesis: Perspectives and opportunities in tumour research – A method display
- Andreas Max Pabst, Maximilian Ackermann, Willi Wagner, David Haberthür, Thomas Ziebart, Moritz Anton Konerding
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- IF 2014: 2.933
2013
Visualization and stereological characterization of individual rat lung acini by high-resolution X-ray tomographic microscopy
- David Haberthür, Sébastien F. Barré, Stefan A. Tschanz, Eveline Yao, Marco Stampanoni and Johannes C. Schittny
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- IF 2013: 3.434
2012
The simultaneous role of an alveolus as flow mixer and flow feeder for the deposition of inhaled submicron particles
- Frank Henry, Shimon Haber, David Haberthür, Nenad Filipovic, D Milasinovic, Johannes C. Schittny and Akira Tsuda
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- IF 212: 1.519
2011
Local Strain Distribution in Real Three-Dimensional Alveolar Geometries
- Sophie M. K. Rausch, David Haberthür, Marco Stampanoni, Johannes C. Schittny and Wolfgang A. Wall
High-Resolution Phase-Contrast Imaging of Sub-micron Particles in Unstained Lung Parenchyma
- Johannes C. Schittny, Sébastien F. Barré, Rajmund Mokso, David Haberthür, Manuela Semmler-Behnke, Wolfgang G. Kreyling, Akira Tsuda and Marco Stampanoni
Following Dynamic Processes by X-ray Tomographic Microscopy with Sub-second Temporal Resolution
- R. Mokso, F. Marone, D. Haberthür, J.C. Schittny, G. Mikuljan, A. Isenegger, and M. Stampanoni
- Proceeding for the XRM2010
2010
Radiation dose optimized lateral expansion of the field of view in synchrotron radiation X-ray tomographic microscopy
- David Haberthür, Christoph Hintermüller, Federica Marona, Johannes C. Schittny and Marco Stampanoni
- Journal of Synchrotron Radiation, Cover Image!
Deciphering complex, functional structures with synchrotron-based absorption and phase contrast tomographic microscopy
- M. Stampanoni, J. Reichold, B. Weber, D. Haberthür, J. Schittny, J. Eller, F. N. Büchi and F. Marone
- Proceedings SPIE 7804
High resolution tomographic imaging of the alveolar region of the mammalian lung
- Ph.D-Thesis
- Institute of Anatomy, University of Bern
- May 2010
- low resolution pdf, 3.4 MB
- Archived entry in the University library of the University of Bern
2009
Multimodal imaging for the detection of sub-micron particles in the gas-exchange region of the mammalian lung
- David Haberthür, Manuela Semmler-Behnke, Shinji Takenaka, Wolfgang G Kreyling, Marco Stampanoni, Akira Tsuda and Johannes C Schittny
- Journal of Physics: Conference Series Volume 186 Number 1
Enhanced cathepsin k release from osteoclasts is linked to idiopathic osteoporosis in mice with BK channel ablation
- Sausbier, M, Dullin, C, Kabagema, C, Flockerzie, K, Haberthür, D, Wessels, J, Alves, F, Schittny, JC, Neuhuber, W, Ruth, P, Sausbier, U
- 50th Annual Meeting of the Deutsche Gesellschaft für Experimentelle und Klinische Pharmakologie und Toxikologie
2008
Finite Element 3D Reconstruction of the pulmonary acinus imaged by Synchrotron X-ray tomography
- Akira Tsuda, Nenad Filipovic, David Haberthür, Renee Dickie, Yasuto Matsui, Johannes C. Schittny
- Journal of Applied Physiology 105: 964-976, 2008, First published June 26, 2008
Quality guided wide field x-ray tomographic imaging
- Post-graduate Master Thesis of the MAS in Medical Physics
- University of Bern, Institute of Anatomy and Paul Scherrer Institute, Swiss Light Source
- August 2008
- pdf, 1.1 MB
Bioglass as Bone Substitute
- Homework for Lecture in Biocompatible Materials
- April 2008
- pdf 148 KB
- released under a CC Attribution-Non-Commercial 2.5 License
2007
Contact Lenses
- Homework for Lecture in Biocompatible Materials 1
- November 2007
- pdf, 193 KB
- released under a CC Attribution-Non-Commercial 2.5 License
2003-2006
I did something else then.
2002
Use of Lasers in Medicine: Tissue Soldering and Precise Cutting
- Master Thesis
- University of Bern, Institute of Applied Physics, Biomedical Photonics
- October 2002
- pdf, 1.2 MB