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--- publications [2023/03/09 17:26] – [MicroCT-based imaging of microvasculature within the bone tissue] ptsp5h
+++ publications [2024/03/15 17:09] (current) – ptsp5h
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 Below is a list of my publications.
 If you'd like to see a citation report, please have a look at these reports from [[http://apps.webofknowledge.com/CitationReport.do?product=UA&search_mode=CitationReport&SID=N2PjY3WwLQgR7C3zTvB&page=1&cr_pqid=34&viewType=summary|Web of Science]], [[https://www.scopus.com/authid/detail.uri?authorId=25121174800|Scopus]], [[http://scholar.google.ch/citations?user=DllHlQgAAAAJ|Google Scholar]] or [[http://orcid.org/0000-0003-3388-9187|orcid]].
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 ====== Submitted OR In revision ======
-===== MicroCT-based imaging of microvasculature within the bone tissue =====
+===== Lymph node inclusion in a modified osteomyocutaneous allograft for vascularized composite allotransplantation: establishment and assessment of feasibility in a pig model =====
+  * Stefanie Hirsiger, Ioana Lese, Isabel Arenas Hoyos, Cédric Zubler, David Haberthür, Ruslan Hlushchuck, Valentin Djonov, Yara Banz, Ana Macek, Hendrik von Tengg-Kobligk, Daniela Casoni, Robert Rieben, Radu Olariu
+  * submitted to [[ https://journals.lww.com/prsgo/pages/default.aspx | PRS Global Open ]]
+===== MicroCT-based method for imaging microvasculature within bone tissue =====
   * David Haberthür, Oleksiy-Zakhar Khoma, Tim Hoessly, Eugenio Zoni, Marianna Kruithof-de Julio, Stewart D. Ryan, Myriam Grunewald, Benjamin Bellon, Rebecca Sandgren, Benjamin E. Pippenger, Dieter Bosshardt, Valentin Djonov, Ruslan Hlushchuk
-  * preprint on bioRxiv: [[https://doi.org/XXXX |doi:XXXX ]]
+  * preprint on bioRxiv: [[https://doi.org/https://doi.org/10.1101/2023.03.08.531678  |doi:10.1101/2023.03.08.531678]]
-  * submitted to [[http://www.small-methods.com/| Small Methods]] as smtd.202300311
+  * Re-submitted to [[http://www.small-methods.com/| Small Methods]] as smtd.202300914 after revisions were done for smtd.202300311
+  * Since submission, the manuscript is being worked on with the help of [[https://manubot.org|manubot]], the canonical version of the manuscript is available via its [[https://github.com/microct-ana-unibe-ch/microvasculature-manuscript| GitHub repository]] here: http://microct.ch/microvasculature-manuscript/
-===== High-resolution X-ray tomography reveals the first fossils of the thorn snail species, Carychium floridanum G. H. Clapp, 1918 and Carychium nashuaense sp. nov. from the Lower Pleistocene Nashua Formation of Florida (Eupulmonata, Ellobioidea, Carychiidae) =====
-  * Adrienne Jochum, Estee Bochud, David Haberthür, Harry G. Lee, Ruslan Hlushchuk, Roger W. Portell
-  * submitted to [[https://zookeys.pensoft.net| Zookeys]] as #102840
-===== Preventing CIV dimerization by Cox7a1 ablation rewires muscle metabolism and promotes heart regeneration =====
-  * Carolina García-Poyatos, Indre Piragyte, Enrique Calvo, David Haberthür, Peter Vermathen, Ruslan Hlushchuk, Jesús Vázquez, José Antonio Enríquez and Nadia Mercader3
-  * submitted to [[https://www.nature.com/natmetab/ | Nature Metabolism]] as NATMETAB-A23018147
-===== Location specific pathology analysis of the monopodial pulmonary vasculature in a rabbit model of bronchopulmonary dysplasia =====
-  * Jonas Labode, David Haberthür, Ruslan Hlushchuk, Yannick Regin, Andre Gie, Thomas Salaets, Jaan Toelen, and Christian Mühlfeld
-  * submitted to [[https://journals.physiology.org/journal/ajpregu | American Journal of Physiology-Regulatory, Integrative and Comparative Physiology]] as R-00013-2023
-===== Is μCT-irradiation non-destructive? A noble gas study on matrix samples from the CV3 chondrite Allende =====
-  * Parastoo Ghaznavi, Yogita Kadlag, David Haberthür, Ruslan Hlushchuk2, Ingo Leya
-  * submitted to [[https://meteoritical.org/publications/meteoritics-and-planetary-science | Meteoritics & Planetary Science]]
-===== Quantifying physical properties and average atomic numbers of chondrules using computed tomography =====
-  * Yogita Kadlag, David Haberthür, Ingo Leya, Ruslan Hlushchuk, Klaus Mezger
-  * Under revision for [[https://meteoritical.org/publications/meteoritics-and-planetary-science | Meteoritics & Planetary Science]] as MAPS-3870.
 ===== Downregulation of WT1 transcription factor gene expression is required to promote myocardial fate =====
@@ Line 36: / Line 22: @@
   * preprint on bioRxiv: [[https://doi.org/10.1101/2021.07.06.451274 |doi:10.1101/2021.07.06.451274 ]]
   * submitted to [[https://journals.plos.org/plosbiology/ | PLOS Biology ]]
+====== 2024 ======
+=====  Cox7a1 mediated CIV dimerization impacts skeletal muscle physiology and cardiac injury response  =====
+  * Carolina García-Poyato, Prateek Arora, Enrique Calvo, Peter Vermathen: David Haberthür: Ines J Marques: Nick Kirschke: Maria Galardi-Castilla: Carla Lembke: Marco Meer: Paula Fernández-Montes: Alexander Ernst: Ruslan Hlushchuk: Jesús Vázquez: José Antonio Enríquez: Nadia Mercader
+  * accepted to [[ https://www.cell.com/developmental-cell/home | Developmental Cell ]]
 ====== 2023 ======
+===== Physical properties and average atomic numbers of chondrules using computed tomography =====
+  * Yogita Kadlag, David Haberthür, Ingo Leya, Ruslan Hlushchuk, Klaus Mezger
+  * [[https://www.sciencedirect.com/journal/planetary-and-space-science | Planetary and Space Science]]
+    * ISSN: [[https://portal.issn.org/resource/issn/1873-5088|1873-5088]]
+    * [[ https://www.scopus.com/sourceid/19700170477 | CiteScore]]: 4.6 (2022)
+    * Journal Impact Factor: 2.4
+  * [[https://doi.org/10.1016/j.pss.2023.105799 | doi:10.1016/j.pss.2023.105799]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1016/j.pss.2023.105799"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1016/j.pss.2023.105799"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
+  * [[BibTeX:Kadlag2023 | BibTeX]]
+===== Airspace diameter map - a quantitative measurement of all pulmonary airspaces to characterize structural lung diseases =====
+  * Sanja Blaskovic, Pinelopi Anagnostopoulou, Elena Borisova, Dominik Schittny, Yves Donati, David Haberthür, Zhe Zhou-Suckow, Marcus A. Mall, Christian M. Schlepütz, Marco Stampanoni, Constance Barazzone-Argiroffo, Johannes C. Schittny
+  * [[https://www.mdpi.com/journal/cells| Cells]]
+    * EISSN: [[https://portal.issn.org/resource/issn/2073-4409| 2073-4409]]
+    * [[ https://www.scopus.com/sourceid/21100978391 | CiteScore]]: 9.0 (2022)
+    * Journal Impact Factor: 6.0 (2022)
+  * [[https://doi.org/10.3390/cells12192375 | doi:10.3390/cells12192375]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.3390/cells12192375"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.3390/cells12192375"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
+  * [[BibTeX:Blaskovic2023 | BibTeX]]
+===== Microtomographic investigation of a large corpus of cichlids =====
+  * David Haberthür, Mikki Law, Kassandra Ford, Marcel Häsler, Ole Seehausen, Ruslan Hlushchuk
+  * The manuscript was written with the help of [[https://manubot.org|manubot]], its canonical version is available via its [[https://github.com/habi/EAWAG-manuscript/ | GitHub repository]] at: https://habi.github.io/EAWAG-manuscript/
+  * [[https://journals.plos.org/plosone/| PLOS ONE]]
+    * EISSN: [[https://portal.issn.org/resource/issn/1932-6203| 1932-6203]]
+    * [[ https://www.scopus.com/sourceid/10600153309 | CiteScore]]: 6.0 (2022)
+    * Journal Impact Factor: "PLOS does not consider Impact Factor to be a reliable or useful metric to assess the performance of individual articles."
+  * [[https://doi.org/10.1371/journal.pone.0291003 | doi:10.1371/journal.pone.0291003 ]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1371/journal.pone.0291003"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1371/journal.pone.0291003 "></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
+  * [[BibTeX:Haberthuer2023 | BibTeX]]
+===== Fossil Carychiidae (Eupulmonata, Ellobioidea) from the Lower Pleistocene Nashua Formation of Florida, with the description of a new species =====
+  * Adrienne Jochum, Estee Bochud, David Haberthür, Harry G. Lee, Ruslan Hlushchuk, Roger W. Portell
+  * [[https://zookeys.pensoft.net| Zookeys]]
+    * ISSN: [[https://portal.issn.org/resource/issn/1313-2970| 1313-2970]]
+    * [[ https://www.scopus.com/sourceid/19700170477 | CiteScore]]: 2.7 (2022)
+    * Journal Impact Factor: 1.492
+  * [[https://doi.org/10.3897/zookeys.1167.102840 | doi:10.3897/zookeys.1167.102840]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.3897/zookeys.1167.102840"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.3897/zookeys.1167.102840"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
+  * [[BibTeX:Jochum2023 | BibTeX]]
+===== Location specific pathology analysis of the monopodial pulmonary vasculature in a rabbit model of bronchopulmonary dysplasia =====
+  * Jonas Labode, David Haberthür, Ruslan Hlushchuk, Yannick Regin, Andre Gie, Thomas Salaets, Jaan Toelen, and Christian Mühlfeld
+  * [[https://physoc.onlinelibrary.wiley.com/journal/2051817X | Physiological Reports]]
+    * ISSN: [[ https://portal.issn.org/resource/ISSN/2051-817X | 2051-817X ]]
+    * CiteScore (Scopus): 3.9
+    * Journal Citation Indicator (Clarivate): 0.7
+  * [[https://doi.org/10.14814/phy2.15747 | doi:10.14814/phy2.15747]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.14814/phy2.15747"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.14814/phy2.15747"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
+  * [[BibTeX:Labode2023 | BibTeX]]
+===== Is μCT-irradiation non-destructive? A noble gas study on matrix samples from the CV3 chondrite Allende =====
+  * Parastoo Ghaznavi, Yogita Kadlag, David Haberthür, Ruslan Hlushchuk, Ingo Leya
+  * [[https://meteoritical.org/publications/meteoritics-and-planetary-science | Meteoritics & Planetary Science]]
+    * ISSN: [[ https://portal.issn.org/resource/ISSN/1945-5100 | 1945-5100 ]]
+    * IF: (2021): 2.890
+    * Journal Citation Reports (Clarivate, 2022): 41/87 (Geochemistry & Geophysics)
+  * [[https://doi.org/10.1111/maps.13996 | doi:10.1111/maps.13996]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1111/maps.13996"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1111/maps.13996"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
+  * [[BibTeX:Ghaznavi2023 | BibTeX]]
 ====== 2022 ======
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     *  IF: [[https://www.medizin.unibe.ch/forschung/forschungsevaluation/journalindex/ | 1.546]] (ZOOKEYS)
     * Ranking: 0.54/ZOOLOGY
-  * [[https://doi.org/10.3897/zookeys.1073.73241 | doi:10.3897/zookeys.1073.73241]] <html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.3897/zookeys.1073.73241"></div></html> <html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.3897/zookeys.1073.73241"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
+    * [[ https://www.scopus.com/sourceid/19700170477 | CiteScore]]: 2.7 (2022)
+  * [[https://doi.org/10.3897/zookeys.1073.73241 | doi:10.3897/zookeys.1073.73241]] <html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.3897/zookeys.1073.73241"></div></html> <html>
+<span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.3897/zookeys.1073.73241"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
   * [[BibTeX:Bochud2021|BibTeX]]