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publications [2022/08/11 10:50] – Replace outdated link for journal index ptsp5hpublications [2024/03/15 17:09] (current) ptsp5h
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 Below is a list of my publications. Below is a list of my publications.
 If you'd like to see a citation report, please have a look at these reports from [[http://apps.webofknowledge.com/CitationReport.do?product=UA&search_mode=CitationReport&SID=N2PjY3WwLQgR7C3zTvB&page=1&cr_pqid=34&viewType=summary|Web of Science]], [[https://www.scopus.com/authid/detail.uri?authorId=25121174800|Scopus]], [[http://scholar.google.ch/citations?user=DllHlQgAAAAJ|Google Scholar]] or [[http://orcid.org/0000-0003-3388-9187|orcid]]. If you'd like to see a citation report, please have a look at these reports from [[http://apps.webofknowledge.com/CitationReport.do?product=UA&search_mode=CitationReport&SID=N2PjY3WwLQgR7C3zTvB&page=1&cr_pqid=34&viewType=summary|Web of Science]], [[https://www.scopus.com/authid/detail.uri?authorId=25121174800|Scopus]], [[http://scholar.google.ch/citations?user=DllHlQgAAAAJ|Google Scholar]] or [[http://orcid.org/0000-0003-3388-9187|orcid]].
  
-======  Submitted OR In revision ====== +====== Submitted OR In revision ======
-===== Quantifying physical and chemical properties of chondrules using computed tomography ===== +
-  * Yogita Kadlag, David Haberthür, Ingo Leya, Ruslan Hlushchuk, Klaus Mezger +
-  * submitted to [[https://meteoritical.org/publications/meteoritics-and-planetary-science | Meteoritics & Planetary Science]]+
  
-===== Reply to “Longevity data do not support ectothermy in early mammaliaforms” ===== +===== Lymph node inclusion in a modified osteomyocutaneous allograft for vascularized composite allotransplantation: establishment and assessment of feasibility in a pig model ===== 
-  * Elis NewhamPamela G. GillMichael J. BentonPhilippa Brewer, Neil J. Gostling, David Haberthür, Jukka JernvallTuomas KankanpääAki KallonenCharles NavarroAlexandra PacureanuKelly RichardsKate Robson BrownPhilipp SchneiderHeikki SuhonenPaul TafforeauKatherine WilliamsBerit Zeller-PlumhoffIan JCorfe +  * Stefanie HirsigerIoana LeseIsabel Arenas HoyosCédric Zubler, David Haberthür, Ruslan HlushchuckValentin DjonovYara BanzAna MacekHendrik von Tengg-KobligkDaniela CasoniRobert RiebenRadu Olariu 
-  * submitted revised version to [[https://www.nature.com/ncomms/ | Nature Communications]] as NCOMMS-21-39389A+  * submitted to [[ https://journals.lww.com/prsgo/pages/default.aspx | PRS Global Open ]] 
 + 
 +===== MicroCT-based method for imaging microvasculature within bone tissue ===== 
 +  * David HaberthürOleksiy-Zakhar KhomaTim HoesslyEugenio ZoniMarianna Kruithof-de JulioStewart DRyan, Myriam Grunewald, Benjamin Bellon, Rebecca Sandgren, Benjamin E. Pippenger, Dieter Bosshardt, Valentin Djonov, Ruslan Hlushchuk 
 +  * preprint on bioRxiv: [[https://doi.org/https://doi.org/10.1101/2023.03.08.531678  |doi:10.1101/2023.03.08.531678]] 
 +  * Re-submitted to [[http://www.small-methods.com/Small Methods]] as smtd.202300914 after revisions were done for smtd.202300311 
 +  * Since submission, the manuscript is being worked on with the help of [[https://manubot.org|manubot]], the canonical version of the manuscript is available via its [[https://github.com/microct-ana-unibe-ch/microvasculature-manuscript| GitHub repository]] here: http://microct.ch/microvasculature-manuscript/
  
 ===== Downregulation of WT1 transcription factor gene expression is required to promote myocardial fate ===== ===== Downregulation of WT1 transcription factor gene expression is required to promote myocardial fate =====
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   * preprint on bioRxiv: [[https://doi.org/10.1101/2021.07.06.451274 |doi:10.1101/2021.07.06.451274 ]]   * preprint on bioRxiv: [[https://doi.org/10.1101/2021.07.06.451274 |doi:10.1101/2021.07.06.451274 ]]
   * submitted to [[https://journals.plos.org/plosbiology/ | PLOS Biology ]]   * submitted to [[https://journals.plos.org/plosbiology/ | PLOS Biology ]]
 +
 +====== 2024 ======
 +=====  Cox7a1 mediated CIV dimerization impacts skeletal muscle physiology and cardiac injury response  =====
 +  * Carolina García-Poyato, Prateek Arora, Enrique Calvo, Peter Vermathen: David Haberthür: Ines J Marques: Nick Kirschke: Maria Galardi-Castilla: Carla Lembke: Marco Meer: Paula Fernández-Montes: Alexander Ernst: Ruslan Hlushchuk: Jesús Vázquez: José Antonio Enríquez: Nadia Mercader
 +  * accepted to [[ https://www.cell.com/developmental-cell/home | Developmental Cell ]]
 +
 +====== 2023 ======
 +===== Physical properties and average atomic numbers of chondrules using computed tomography =====
 +  * Yogita Kadlag, David Haberthür, Ingo Leya, Ruslan Hlushchuk, Klaus Mezger
 +  * [[https://www.sciencedirect.com/journal/planetary-and-space-science | Planetary and Space Science]]
 +    * ISSN: [[https://portal.issn.org/resource/issn/1873-5088|1873-5088]]
 +    * [[ https://www.scopus.com/sourceid/19700170477 | CiteScore]]: 4.6 (2022)
 +    * Journal Impact Factor: 2.4
 +  * [[https://doi.org/10.1016/j.pss.2023.105799 | doi:10.1016/j.pss.2023.105799]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1016/j.pss.2023.105799"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1016/j.pss.2023.105799"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
 +  * [[BibTeX:Kadlag2023 | BibTeX]]
 +
 +===== Airspace diameter map - a quantitative measurement of all pulmonary airspaces to characterize structural lung diseases =====
 +  * Sanja Blaskovic, Pinelopi Anagnostopoulou, Elena Borisova, Dominik Schittny, Yves Donati, David Haberthür, Zhe Zhou-Suckow, Marcus A. Mall, Christian M. Schlepütz, Marco Stampanoni, Constance Barazzone-Argiroffo, Johannes C. Schittny
 +  * [[https://www.mdpi.com/journal/cells| Cells]]
 +    * EISSN: [[https://portal.issn.org/resource/issn/2073-4409| 2073-4409]]
 +    * [[ https://www.scopus.com/sourceid/21100978391 | CiteScore]]: 9.0 (2022)
 +    * Journal Impact Factor: 6.0 (2022)
 +  * [[https://doi.org/10.3390/cells12192375 | doi:10.3390/cells12192375]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.3390/cells12192375"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.3390/cells12192375"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
 +  * [[BibTeX:Blaskovic2023 | BibTeX]]
 +
 +===== Microtomographic investigation of a large corpus of cichlids =====
 +  * David Haberthür, Mikki Law, Kassandra Ford, Marcel Häsler, Ole Seehausen, Ruslan Hlushchuk
 +  * The manuscript was written with the help of [[https://manubot.org|manubot]], its canonical version is available via its [[https://github.com/habi/EAWAG-manuscript/ | GitHub repository]] at: https://habi.github.io/EAWAG-manuscript/
 +  * [[https://journals.plos.org/plosone/| PLOS ONE]]
 +    * EISSN: [[https://portal.issn.org/resource/issn/1932-6203| 1932-6203]]
 +    * [[ https://www.scopus.com/sourceid/10600153309 | CiteScore]]: 6.0 (2022)
 +    * Journal Impact Factor: "PLOS does not consider Impact Factor to be a reliable or useful metric to assess the performance of individual articles."
 +  * [[https://doi.org/10.1371/journal.pone.0291003 | doi:10.1371/journal.pone.0291003 ]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1371/journal.pone.0291003"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1371/journal.pone.0291003 "></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
 +  * [[BibTeX:Haberthuer2023 | BibTeX]]
 +
 +===== Fossil Carychiidae (Eupulmonata, Ellobioidea) from the Lower Pleistocene Nashua Formation of Florida, with the description of a new species =====
 +  * Adrienne Jochum, Estee Bochud, David Haberthür, Harry G. Lee, Ruslan Hlushchuk, Roger W. Portell
 +  * [[https://zookeys.pensoft.net| Zookeys]]
 +    * ISSN: [[https://portal.issn.org/resource/issn/1313-2970| 1313-2970]]
 +    * [[ https://www.scopus.com/sourceid/19700170477 | CiteScore]]: 2.7 (2022)
 +    * Journal Impact Factor: 1.492
 +  * [[https://doi.org/10.3897/zookeys.1167.102840 | doi:10.3897/zookeys.1167.102840]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.3897/zookeys.1167.102840"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.3897/zookeys.1167.102840"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
 +  * [[BibTeX:Jochum2023 | BibTeX]]
 +
 +===== Location specific pathology analysis of the monopodial pulmonary vasculature in a rabbit model of bronchopulmonary dysplasia =====
 +  * Jonas Labode, David Haberthür, Ruslan Hlushchuk, Yannick Regin, Andre Gie, Thomas Salaets, Jaan Toelen, and Christian Mühlfeld
 +  * [[https://physoc.onlinelibrary.wiley.com/journal/2051817X | Physiological Reports]]
 +    * ISSN: [[ https://portal.issn.org/resource/ISSN/2051-817X | 2051-817X ]]
 +    * CiteScore (Scopus): 3.9
 +    * Journal Citation Indicator (Clarivate): 0.7
 +  * [[https://doi.org/10.14814/phy2.15747 | doi:10.14814/phy2.15747]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.14814/phy2.15747"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.14814/phy2.15747"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
 +  * [[BibTeX:Labode2023 | BibTeX]]
 +
 +===== Is μCT-irradiation non-destructive? A noble gas study on matrix samples from the CV3 chondrite Allende =====
 +  * Parastoo Ghaznavi, Yogita Kadlag, David Haberthür, Ruslan Hlushchuk, Ingo Leya
 +  * [[https://meteoritical.org/publications/meteoritics-and-planetary-science | Meteoritics & Planetary Science]]
 +    * ISSN: [[ https://portal.issn.org/resource/ISSN/1945-5100 | 1945-5100 ]]
 +    * IF: (2021): 2.890
 +    * Journal Citation Reports (Clarivate, 2022): 41/87 (Geochemistry & Geophysics)
 +  * [[https://doi.org/10.1111/maps.13996 | doi:10.1111/maps.13996]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1111/maps.13996"></div></html><html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1111/maps.13996"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
 +  * [[BibTeX:Ghaznavi2023 | BibTeX]]
  
 ====== 2022 ====== ====== 2022 ======
 +===== Reply to: Revisiting life history and morphological proxies for early mammaliaform metabolic rates =====
 +  * Elis Newham, Pamela Gill, Michael Benton, Philippa Brewer, Neil Gostling, David Haberthür , Jukka Jernvall, Tuomas Kankanpää, Aki Kallonen, Charles Navarro, Alexandra Pacureanu, Kelly Richards , Kate Robson Brown, Philipp Schneider, Heikki Suhonen, Paul Tafforeau, Katherine Williams, Berit Zeller-Plumhoff
 +  * [[https://www.nature.com/ncomms/ | Nature Communications]]
 +    * ISSN: [[https://portal.issn.org/resource/ISSN/2041-1723|2041-1723]]
 +    * IF: [[https://www.medizin.unibe.ch/forschung/forschungsevaluation/journalindex/|14.919]]
 +    * Ranking: 0.958/MULTIDISCIPLINARY SCIENCES
 +  * [[https://doi.org/10.1038/s41467-022-32716-z | doi:10.1038/s41467-022-32716-z]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1038/s41467-022-32716-z"></div></html> <html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1038/s41467-022-32716-z"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
 +  * [[BibTeX:Newham2022|BibTeX]]
 +   
 ===== Microbeam Radiation Therapy controls local growth of radioresistant melanoma and treats out-of-field locoregional metastasis ===== ===== Microbeam Radiation Therapy controls local growth of radioresistant melanoma and treats out-of-field locoregional metastasis =====
   * Verdiana Trappetti, Marine Potez, Cristian Fernandez-Palomo, Vladislav Volarevic, Nahoko Shintani, Paolo Pellicioli, Alexander Ernst, David Haberthür, Jennifer M. Fazzari, Michael Krisch, Jean A. Laissue, Robin L. Anderson, Olga A. Martin, Valentin G. Djonov   * Verdiana Trappetti, Marine Potez, Cristian Fernandez-Palomo, Vladislav Volarevic, Nahoko Shintani, Paolo Pellicioli, Alexander Ernst, David Haberthür, Jennifer M. Fazzari, Michael Krisch, Jean A. Laissue, Robin L. Anderson, Olga A. Martin, Valentin G. Djonov
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     * ISSN: [[https://portal.issn.org/resource/ISSN/0360-3016|0360-3016]]     * ISSN: [[https://portal.issn.org/resource/ISSN/0360-3016|0360-3016]]
     * IF: [[https://www.medizin.unibe.ch/forschung/forschungsevaluation/journalindex/|7.038]]     * IF: [[https://www.medizin.unibe.ch/forschung/forschungsevaluation/journalindex/|7.038]]
-      * Ranking: 0.925/ONCOLOGY+    * Ranking: 0.925/ONCOLOGY
   * [[https://doi.org/10.1016/j.ijrobp.2022.06.090 | doi:10.1016/j.ijrobp.2022.06.090]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1016/j.ijrobp.2022.06.090"></div></html> <html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1016/j.ijrobp.2022.06.090"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>   * [[https://doi.org/10.1016/j.ijrobp.2022.06.090 | doi:10.1016/j.ijrobp.2022.06.090]]<html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.1016/j.ijrobp.2022.06.090"></div></html> <html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.1016/j.ijrobp.2022.06.090"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
   * [[BibTeX:Trapetti2022|BibTeX]]   * [[BibTeX:Trapetti2022|BibTeX]]
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   * [[BibTeX:Laissue2021|BibTeX]]   * [[BibTeX:Laissue2021|BibTeX]]
  
-===== Registration of serial sections: An evaluation method based on distortions of the ground truths =====+===== Evaluating Registrations of Serial Sections With Distortions of the Ground Truths =====
   * Oleg Lobachev, Takuya Funatomi, Alexander Pfaffenroth, Reinhold Förster, Lars Knudsen, Christoph Wrede, Michael Guthe, David Haberthür, Ruslan Hlushchuk, Thomas Salaets, Jaan Toelen, Simone Gaffling, Christian Mühlfeld, Roman Grothausmann   * Oleg Lobachev, Takuya Funatomi, Alexander Pfaffenroth, Reinhold Förster, Lars Knudsen, Christoph Wrede, Michael Guthe, David Haberthür, Ruslan Hlushchuk, Thomas Salaets, Jaan Toelen, Simone Gaffling, Christian Mühlfeld, Roman Grothausmann
   *  [[https://ieeeaccess.ieee.org/ | IEEE Access]]   *  [[https://ieeeaccess.ieee.org/ | IEEE Access]]
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     *  IF: [[https://www.medizin.unibe.ch/forschung/forschungsevaluation/journalindex/ | 1.546]] (ZOOKEYS)      *  IF: [[https://www.medizin.unibe.ch/forschung/forschungsevaluation/journalindex/ | 1.546]] (ZOOKEYS) 
     * Ranking: 0.54/ZOOLOGY     * Ranking: 0.54/ZOOLOGY
-  * [[https://doi.org/10.3897/zookeys.1073.73241 | doi:10.3897/zookeys.1073.73241]] <html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.3897/zookeys.1073.73241"></div></html> <html><span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.3897/zookeys.1073.73241"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>+    * [[ https://www.scopus.com/sourceid/19700170477 | CiteScore]]: 2.7 (2022) 
 +  * [[https://doi.org/10.3897/zookeys.1073.73241 | doi:10.3897/zookeys.1073.73241]] <html><div class='altmetric-embed' data-badge-popover='right' data-hide-no-mentions="true" data-doi="10.3897/zookeys.1073.73241"></div></html> <html> 
 +<span class="__dimensions_badge_embed__" data-hide-zero-citations="true" data-style="small_rectangle" data-doi="10.3897/zookeys.1073.73241"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></html>
   * [[BibTeX:Bochud2021|BibTeX]]   * [[BibTeX:Bochud2021|BibTeX]]
  
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   * [[BibTeX:Haberthur2021a|BibTeX]]   * [[BibTeX:Haberthur2021a|BibTeX]]
  
-===== The first pre-clinical study employing Synchrotron Microbeam Radiotherapy for the treatment of lung carcinoma =====+===== Synchrotron Microbeam Radiation Therapy for the Treatment of Lung Carcinoma: A Preclinical Study =====
   * Verdiana Trappetti, Cristian Fernandez-Palomo, Lloyd Smyth, Mitzi Klein, David Haberthür, Duncan Buttler, Micah Barnes, Nahoko Shintani, Michael de Veer, Jean A. Laissue, Marie C. Vozenin, Valentin Djonov   * Verdiana Trappetti, Cristian Fernandez-Palomo, Lloyd Smyth, Mitzi Klein, David Haberthür, Duncan Buttler, Micah Barnes, Nahoko Shintani, Michael de Veer, Jean A. Laissue, Marie C. Vozenin, Valentin Djonov
    * [[https://www.redjournal.org/ | International Journal of Radiation Oncology*Biology*Physics ]]    * [[https://www.redjournal.org/ | International Journal of Radiation Oncology*Biology*Physics ]]
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