http://wiki.davidhaberthuer.ch/ 2026-04-23T17:02:12+00:00 http://wiki.davidhaberthuer.ch/ http://wiki.davidhaberthuer.ch/_media/wiki/dokuwiki.svg text/html 2020-06-10T19:42:24+00:00 Anonymous (anonymous@undisclosed.example.com) http://wiki.davidhaberthuer.ch/microct/currentvspotential.m?rev=1591818144&do=diff % Visualization of different Controlfile setups of the MicroCT at the DKF. % We aim to plot current [kV] vs. potential [uA] of the x-ray tube. clc;clear all;close all Current = [45,45,55,55,70,70]; Potential = [88,177,72,145,57,114]; figure plot(Current(1:2:end),Potential(1:2:end),'r-*'); hold on plot(Current(2:2:end),Potential(2:2:end),'r-*'); title('Current vs. Potential') xlabel('Strom/kV') xlim([40 75]) ylabel('Spannung/\mu A') ylim([50 190]) prin… text/html 2020-06-10T19:42:24+00:00 Anonymous (anonymous@undisclosed.example.com) http://wiki.davidhaberthuer.ch/microct/logfile.tex?rev=1591818144&do=diff I deliberately violated the “Never, ever use vertical rules”-guideline of CTAN:booktabs here... \documentclass[paper=a4]{scrartcl} \usepackage{booktabs} \begin{document} \thispagestyle{empty} \noindent Measurement:\dotfill\\ \begin{table}[h] \centering \begin{tabular}{c|c|c|c|c} Sample Name & ControlFile & Measurement \# & Job \# & Time and Date \\ \midrule & & & &\\ \midrule & & & &\\ \midrule & & & &\\ \midrule & & & &\\ \midrule & & & &\\ \midrule & & & &\\ \mi… text/html 2020-06-10T19:42:24+00:00 Anonymous (anonymous@undisclosed.example.com) http://wiki.davidhaberthuer.ch/microct/remote_access?rev=1591818144&do=diff Remote Access SSH: Working on the µ40 from remote The machine can be accessed per ssh using $ anatomie@dkf38-20.dkf.unibe.ch If you're running an X-server (see the X Server-page for details), you can also start the MicroCT-Command-Window using the command: text/html 2020-06-10T19:42:24+00:00 Anonymous (anonymous@undisclosed.example.com) http://wiki.davidhaberthuer.ch/microct/stack2vms?rev=1591818144&do=diff How2: beliebiger Bilderstack auf die OpenVMS-Maschine des Scanco MicroCT 40 transferieren Bild ins korrekte Format konvertieren: Bild(er-Stack) mit ImageJ laden und dort mit 'File' > 'Save as...' > 'Raw Data' speichern. Dieses .raw-File per FTP auf die OpenVMS-Station verschieben ( text/html 2020-06-10T19:42:24+00:00 Anonymous (anonymous@undisclosed.example.com) http://wiki.davidhaberthuer.ch/microct/usage_manual?rev=1591818144&do=diff Manual for the MicroCT Details The MicroCT at the departement of clinical research is a Scanco µ40 desktop microtomography system. This wiki-page is a manual for using it and performing measurements on it. If you click on the symbol on the top right besides the title, you can download this page as an <center> <object id="scPlayer" class="embeddedObject" width="608" height="478" type="application/x-shockwave-flash" data="http://content.screencast.com/users/haberthuer/folders/Jing/media/a15b… text/html 2020-06-10T19:42:24+00:00 Anonymous (anonymous@undisclosed.example.com) http://wiki.davidhaberthuer.ch/microct/working_with_isq_files?rev=1591818144&do=diff Import ISQ files to other Systems Once you've copied the .ISQ-files from the µCT onto your computer, you can import those files into ImageJ with the use of two different plugins. Below are two ways to import ISQ files The Scanco Way Andres Laib from SCANCO once sent me a bunch of ImageJ Plugins which can be used to read ISQ files. They are all contained in